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  • Eamonn Maguire 10:13 am on September 27, 2012 Permalink | Reply
    Tags: , ISA-Tab, , , metabolights, metabolomics   

    New paper! MetaboLights: towards a new COSMOS of metabolomics data management 

    A new paper, featuring the ISA team as authors is now available to read on MetaboLights (EMBL-EBI metabolomics repository).

    MetaboLights, part of the ISA commons is the new European repository for metabolomic data held at the EBI. Their infrastructure is built upon the ISA software stack, utilising ISAcreator for data entry, ISA-Tab as the format then the BII data manager and database for persistence and storage respectively.

    Click here to access the MetaboLights repository.

     
  • Eamonn Maguire 1:53 am on December 13, 2011 Permalink | Reply
    Tags: , ISA tool, ISA-Tab, Stem Cell   

    Harvard Stem Cell Discovery Engine published in NAR 

     

    The Harvard Stem Cell Discovery Engine (SCDE) is now published in NAR. The SCDE is one of many systems now utilising the ISA tools and ISA-Tab format. Check out the publication.

     

     

     
  • Eamonn Maguire 5:22 pm on August 18, 2011 Permalink | Reply
    Tags: Autocomplete, ISA-Tab, , , , Swing   

    ISAcreator 1.5 in beta testing phase 

    So here’s what’s been added:
    1) ISAvalidator integrated (hence larger file size ~34mb). Access it from the utilities menu item;

    ISAcreator is calling the ISAvalidator component directly now as well as using the standard validation within ISAcreator itself.

    2) New add assay functionality;

    The old subform has been replaced with a new view of the Assays.

    When you click on Create assay, you are now presented with a new component to help you select which assay(s) you wish to add.

    3) New integration with the study sample sheet to look up sample names in autocomplete mode (featuring a new component to build on top of the Java Swing infrastructure to provide better, more customisable autocomplete). Also, if you have factors in your study sample spreadsheet, attached to the sample, these will be propagated automatically to the assay spreadsheet;

    Autocomplete on study samples.

    4) Same autocomplete component is used in protocol ref columns now to look up the protocol name without the clunky widget that was there before.

    Autocomplete on Protocols.

    If you want to test it (please let us know if you have any problems by reporting them in our issue tracker, please download it here!

     
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